Répartition de la biodiversité en France métropolitaine : une synthèse des Atlas faunistiques

Witté, Isabelle; Touroult, Julien

Arponen, A., 2012, Prioritizing species for conservation planning. Biodiversity and Conservation, 21, 4, pp. 875-893.

Bacchetta, G., E. Farris et C. Pontecorvo, 2012, A new method to set conservation priorities in biodiversity hotspots. Plant Biosystems, 146, 3, pp. 638-648.

Google Scholar

Baddeley, A. et R. Turner, 2005, spatstat : An R package for analyzing spatial point patterns. Journal of Statistical Software, 12, pp. 1-42.

Google Scholar

Ball, I.R., H.P. Possingham et M. Watts, 2009, Marxan and relatives : Software for spatial conservation prioritisation. In : Spatial conservation prioritisation : Quantitative methods and computational tools (eds. Moilanen A, Wilson KA & Possingham HP), Oxford University Press, Oxford, UK, pp. 185-195.

Google Scholar

Balletto, E., S. Bonelli, L. Borghesio, A. Casale, P. Brandmayr et A. Vigna Taglianti, 2009, Hotspots of biodiversity and conservation priorities : A methodological approach. Italian Journal of Zoology, 77, 1, pp. 2-13.

Google Scholar

Bandeira, B., J.L. Jamet, D. Jamet et J.M. Ginoux, 2013, Mathematical convergences of biodiversity indices. Ecological Indicators, 29, pp. 522-528.

Google Scholar

Baselga, A., 2008, Determinants of species richness, endemism and turnover in European longhorn beetles. Ecography, 31, 2, pp. 263-271.

Google Scholar

Baselga, A., 2010, Partitioning the turnover and nestedness components of beta diversity. Global Ecology and Biogeography, 19, 1, pp. 134-143.

Google Scholar

Bivand, R. et N. Lewin-Koh, 2013, maptools : Tools for reading and handling spatial objects. In : R package version 0.8-23.

Google Scholar

Cardoso, P., P.A.V. Borges et J.A. Veech, 2009, Testing the performance of beta diversity measures based on incidence data : The robustness to undersampling. Diversity and Distributions, 15, 6, pp. 1081-1090.

Google Scholar

Cardoso, P., T.L. Erwin, P.A.V. Borges et T.R. New, 2011, The seven impediments in invertebrate conservation and how to overcome them. Biological Conservation, 144, 11, pp. 2647-2655.

Google Scholar

Deharveng, L., H. Dalens, D. Drugmand, J.C. Simon-Benito, M.M. da Gama, P. Sousa, C. Gers et A. Bedos, 2000, Endemism mapping and biodiversity conservation in western Europe : An Arthropod perspective. Belgian Journal of Entomology, 2, 1, pp. 59-75.

Google Scholar

Deharveng, L., F. Stoch, J. Gibert, A. Bedos, D. Galassi, M. Zagmajster, A. Brancelj, A. Camacho, F. Fiers, P. Martin, N. Giani, G. Magniez et P. Marmonier, 2009, Groundwater biodiversity in Europe. Freshwater Biology, 54, pp. 709–726.

Google Scholar

Dray, S. et A.B. Dufour, 2007, The ade4 package : implementing the duality diagram for ecologists. Journal of Statistical Software, 22, 4, pp. 1-20.

Google Scholar

Dufrêne, M. et P. Legendre, 1997, Species assemblages and indicator species :The need for a flexible asymmetrical approach. Ecological Monographs, 67, 3, pp. 345-366.

Google Scholar

Eglington, S.M., D.G. Noble et R.J. Fuller, 2012, A meta-analysis of spatial relationships in species richness across taxa : Birds as indicators of wider biodiversity in temperate regions. Journal for Nature Conservation, 20, 5, pp. 301-309.

Google Scholar

Fayard, A., 1984, Atlas des mammifères sauvages de France. SFEPM, Paris, France, 299 p.

Google Scholar

Ferrier, S., 2002, Mapping spatial pattern in biodiversity for regional conservation planning : Where to from here ? Systematic Biology, 51, 2, pp. 331-363.

Google Scholar

Flojgaard, C., S. Normand, F. Skov et J.C. Svenning, 2011, Deconstructing the mammal species richness pattern in Europe - towards an understanding of the relative importance of climate, biogeographic history, habitat heterogeneity and humans. Global Ecology and Biogeography, 20, 2, pp. 218-230.

Google Scholar

Funk, S.M. et J.E. Fa, 2010, Ecoregion prioritization suggests an armoury not a silver bullet for conservation planning. PloS one, 5, 1.

Google Scholar

Gargominy, O., S. Tercerie, P. Daszkiewicz, C. Régnier, T. Ramage, P. Dupont et L. Poncet, 2012, TAXREF v5.0, référentiel taxonomique pour la France : mise en oeuvre et diffusion. Rapport SPN 2012 - 32. Service du Patrimoine Naturel, Direction de la Recherche, de l’Expertise et de la Valorisation, Muséum National d’Histoire Naturelle, Paris, France, 75 p.

Google Scholar

Gaston, K.J., 2000, Global patterns in biodiversity. Nature, 405, 6783, pp. 220-227.

Google Scholar

Gouverneur, X. et P. Guérard, 2011, Les longicornes armoricains - Atlas des coléoptères Cerambycidae des départements du Massif Armoricain. Invertébrés armoricains, , GRETIA Lcd, 224 p.

Google Scholar

Harrison, S., S.J. Ross et J.H. Lawton, 1992, Beta-diversity on geographic gradients in Britain. Journal of Animal Ecology, 61, 1, pp. 151-158.

Google Scholar

Heegaard, E., I. Gjerde et M. Saetersdal, 2013, Contribution of rare and common species to richness patterns at local scales. Ecography, 36, 8, pp. 937-946.

Google Scholar

Heikinheimo, H., M. Fortelius, J. Eronen et H. Mannila, 2007, Biogeography of european land mammals shows environmentally distinct and spatially coherent clusters. Journal of Biogeography, 34, 6, pp. 1053-1064.

Google Scholar

Hortal, J. et J.M. Lobo, 2006, Towards a synecological framework for systematic conservation planning. Biodiversity Informatics, 3, pp. 16-45.

Google Scholar

IGN, SCAN 50. In : http://professionnels.ign.fr/scan50.

Google Scholar

IUCN, 2001, Categories & Criteria (version 3.1). URL http://www.iucnredlist.org/static/categories_criteria_3_1

Google Scholar

Jaunatre, R., E. Buisson, I. Muller, H. Morlon, F. Mesleard et T. Dutoit, 2013, New synthetic indicators to assess community resilience and restoration success. Ecological Indicators, 29, pp. 468-477.

Google Scholar

Jetz, W., J.M. McPherson et R.P. Guralnick, 2012, Integrating biodiversity distribution knowledge : Toward a global map of life. Trends in Ecology and Evolution, 27, 3, pp. 151-159.

Google Scholar

Kaufman, L. et P.J. Rousseeuw, 1990, Finding groups in data : An introduction to cluster analysis. Wiley Series in Probability and Mathematical Statistics, Wiley, New York, 368 p.

Google Scholar

Keith, P., 2000, The part played by protected areas in the conservation of threatened French freshwater fish. Biological Conservation, 92, 3, pp. 265-273.

Google Scholar

Keith, P., H. Persat, E. Feunteun et J. Allardi, 2011, Les poissons d’eau douce de France. Collection Inventaires et Biodiversité, MNHN, Paris, France, 552 p.

Google Scholar

Koleff, P., K.J. Gaston et J.J. Lennon, 2003, Measuring beta diversity for presence–absence data. Journal of Animal Ecology, 72, 3, pp. 367-382.

Google Scholar

Kreft, H. et W. Jetz, 2010, A framework for delineating biogeographical regions based on species distributions. Journal of Biogeography, 37, 11, pp. 2029-2053.

Google Scholar

Lamoreux, J.F., J.C. Morrison, T.H. Ricketts, D.M. Olson, E. Dinerstein, M.W. McKnight et H.H. Shugart, 2006, Global tests of biodiversity concordance and the importance of endemism. Nature, 440, 7081, pp. 212-214.

Google Scholar

Legendre, P. et L. Legendre, 1998, Numerical ecology. 2nd edn, Elsevier, Amsterdam, 852 p.

Google Scholar

Lennon, J.J., P. Koleff, J.J.D. Greenwood et K.J. Gaston, 2004, Contribution of rarity and commonness to patterns of species richness. Ecology Letters, 7, 2, pp. 81-87.

Google Scholar

Leroy, B., A. Canard et F. Ysnel, 2013, Integrating multiple scales in rarity assessments of invertebrate taxa. Diversity and Distributions, 19, 7, pp. 794-803.

Google Scholar

Leroy, B., J. Petillon, R. Gallon, A. Canard et F. Ysnel, 2012, Improving occurrence-based rarity metrics in conservation studies by including multiple rarity cut-off points. Insect Conservation and Diversity, 5, 2, pp. 159-168.

Google Scholar

Lescure, J. et J.-C. de Massary, 2013, Atlas des amphibiens et reptiles de France Collection Inventaires et Biodiversité, MNHN, Paris, France, 272 p.

Google Scholar

Lobo, J.M., J.-P. Lumaret et P. Jay-Robert, 1997, Les atlas faunistiques comme outils d’analyse spatiale de la biodiversité. Annales de la Société entomologique de France, 33, 2, pp. 129-138.

Google Scholar

Lomolino, M.V. et L.R. Heaney, 2004, Frontiers of biogeography : new directions in the geography of nature. Sinauer Associates, Sunderland, Massachusetts, 436 p.

Google Scholar

Lumaret, J.P., 1990, Atlas des coléoptères scarabeides laparosticti de France. Inventaire de Faune et de Flore, Paris, France, 420 p.

Google Scholar

Maechle, M., P. Rousseeuw, A. Struyf, M. Hubert et K. Hornik, 2012, The cluster package : Cluster analysis extended Rousseeuw et al., version 1.14.3. R CRAN.

Google Scholar

Manne, L.L. et P.H. Williams, 2003, Building indicator groups based on species characteristics can improve conservation planning. Animal Conservation, 6, 4, pp. 291-297.

Google Scholar

Margules, C.R. et R.L. Pressey, 2000, Systematic conservation planning. Nature, 405, 6783, pp. 243-253.

Google Scholar

Medail, F. et K. Diadema, 2009, Glacial refugia influence plant diversity patterns in the Mediterranean Basin. Journal of Biogeography, 36, 7, pp. 1333-1345.

Google Scholar

Metzger, M.J., R.G.H. Bunce, R.H.G. Jongman, C.A. Mucher et J.W. Watkins, 2005, A climatic stratification of the environment of Europe. Global Ecology and Biogeography, 14, 6, pp. 549-563.

Google Scholar

Minchin, P., 1987, An evaluation of the relative robustness of techniques for ecological ordination. Vegetatio, 69, 1-3, pp. 89-107.

Google Scholar

MNHN, 2003-2013, Muséum national d’histoire naturelle, inventaire national du patrimoine naturel. URL http://inpn.mnhn.fr, http://inpn.mnhn.fr/espece/inventaire/liste

Google Scholar

Moilanen, A., B.J. Anderson, A. Arponen, F.M. Pouzols et C.D. Thomas, 2013, Edge artefacts and lost performance in national versus continental conservation priority areas. Diversity and Distributions, 19, 2, pp. 171-183.

Google Scholar

Myers, N., R.A. Mittermeier, C.G. Mittermeier, G.A.B. da Fonseca et J. Kent, 2000, Biodiversity hotspots for conservation priorities. Nature, 403, 6772, pp. 853-858.

Google Scholar

Oksanen, J., G. Blanchet, R. Kindt, P. Legendre, B. O’Hara, G.L. Simpson, P. Solymos, M.H.H. Stevens et H. Wagner, 2011, vegan : Community ecology package. In : R package version 1.17-6.

Google Scholar

Orme, C.D.L., R.G. Davies, M. Burgess, F. Eigenbrod, N. Pickup, V.A. Olson, A.J. Webster, T.-S. Ding, P.C. Rasmussen, R.S. Ridgely, A.J. Stattersfield, P.M. Bennett, T.M. Blackburn, K.J. Gaston et I.P.F. Owens, 2005, Global hotspots of species richness are not congruent with endemism or threat. Nature, 436, 7053, pp. 1016-1019.

Google Scholar

Petit, R.J., S. Brewer, S. Bordacs, K. Burg, R. Cheddadi, E. Coart, J. Cottrell, U.M. Csaikl, B. van Dam, J.D. Deans, S. Espinel, S. Fineschi, R. Finkeldey, I. Glaz, P.G. Goicoechea, J.S. Jensen, A.O. Konig, A.J. Lowe, S.F. Madsen, G. Matyas, R.C. Munro, F. Popescu, D. Slade, H. Tabbener, S.G.M. de Vries, B. Ziegenhagen, J.L. de Beaulieu et A. Kremer, 2002, Identification of refugia and post-glacial colonisation routes of European white oaks based on chloroplast DNA and fossil pollen evidence. Forest Ecology and Management, 156, 1-3, pp. 49-74.

Google Scholar

Petitprêtre, J. et V. Marengo, 2011, Coléoptères de Rhône-Alpes. Buprestidae., Lyon, Musée des Confluences, 208 p.

Google Scholar

R Development Core Team, 2010, R : A language and environment for statistical computing. R Foundation for Statistical Computing Vienna, Austria.

Google Scholar

Rabinowitz, D., 1981, Seven forms of rarity. In : The biological aspects of rare plant conservation (ed. Synge H), John Wiley & Sons Ltd. , New York, pp. 205–217.

Google Scholar

Reddy, S. et L.M. Dávalos, 2003, Geographical sampling bias and its implications for conservation priorities in Africa. Journal of Biogeography, 30, 11, pp. 1719-1727.

Google Scholar

Robert, S., P. Gourdain et L. Poncet, 2012, Méthode générale et mise en oeuvre du programme CarNET B. Document interne, Travail en cours. Service du Patrimoine Naturel, Direction de la Recherche, de l’Expertise et de la Valorisation, Muséum National d’Histoire Naturelle Paris, France, p. 39.

Google Scholar

Robertson, A., R.E. Simmons, A.M. Jarvis et C.J. Brown, 1995, Can bird atlas data be used to estimate population size ? A case study using Namibian endemics. Biological Conservation, 71, 1, pp. 87-95.

Google Scholar

Robertson, M.P., G.S. Cumming et B.F.N. Erasmus, 2010, Getting the most out of atlas data. Diversity and Distributions, 16, 3, pp. 363-375.

Google Scholar

Rocchini, D., J. Hortal, S. Lengyel, J.M. Lobo, A. Jiménez-Valverde, C. Ricotta, G. Bacaro et A. Chiarucci, 2011, Accounting for uncertainty when mapping species distributions : The need for maps of ignorance. Progress in Physical Geography, 35, 2, pp. 211-226.

Google Scholar

Rodrigues, A.S.L. et T.M. Brooks, 2007, Shortcuts for biodiversity conservation planning : The effectiveness of surrogates. In : Annual Review of Ecology Evolution and Systematics. Annual Review of Ecology Evolution and Systematics, pp. 713-737.

Google Scholar

Romo Benito, H. et E. García-Barros, 2005, Distribución e intensidad de los estudios faunísticos sobre mariposas diurnas en la Península Ibérica e Islas Baleares (Lepidoptera, Papilionoidea y Hesperioidea). Graellsia, 61, 1, pp. 37-50.

Google Scholar

Rondinini, C., K.A. Wilson, L. Boitani, H. Grantham et H.P. Possingham, 2006, Tradeoffs of different types of species occurrence data for use in systematic conservation planning. Ecology Letters, 9, 10, pp. 1136-1145.

Google Scholar

Schmeller, D., B. Gruber, B. Bauch, K. Lanno, E. Budrys, V. Babij, R. Juskaitis, M. Sammul, Z. Varga et K. Henle, 2008, Determination of national conservation responsibilities for species conservation in regions with multiple political jurisdictions. Biodiversity and Conservation, 17, 14, pp. 3607-3622.

Google Scholar

Svenning, J.C., C. Flojgaard et A. Baselga, 2011, Climate, history and neutrality as drivers of mammal beta diversity in Europe : Insights from multiscale deconstruction. Journal of Animal Ecology, 80, 2, pp. 393-402.

Google Scholar

Touroult, J., P. Haffner, L. Poncet, O. Gargominy, P. Noël, P. Dupont et J.-P. Siblet, 2012, Inventaires nationaux d’espèces : définitions, concepts, organisation et points clés. Rapport méthodologique – version 1. Rapport SPN 2012-24. Service du Patrimoine Naturel, Direction de la Recherche, de l’Expertise et de la Valorisation, Muséum National d’Histoire Naturelle, Paris, France, 26 p.

Google Scholar

Touroult, J. et S. Jolivet, 2012, Connaître pour préserver : L’atlas de répartition. Insectes, 166, 3, pp. 23-25.

Google Scholar

Voisin, J.F., 2003, Atlas des orthoptères et des mantidés de France. Patrimoines Naturels, MNHN, Paris, France, 104 p.

Google Scholar

Ward, J.H., 1963, Hierarchical grouping to optimize an objective function. Journal of the American Statistical Association, 58, 301, pp. 236-244.

Google Scholar

Wickham, H., 2012, The package reshape : Flexibility reshape data version 0.8.4. R CRAN.

Google Scholar

Yaetman-Berthelot, D. et G. Jarry, 1994, Nouvel atlas des oiseaux nicheurs de France. Société Ornithologique de France, Paris, France, 776 p.

Google Scholar